TSS: Rfhg 176717.1: Difference between revisions
From referenceTSS
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation= | |annotation=intron (NR_024595, intron 2 of 4) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
|ccre_description=PLS,CTCF-bound (EH38D2811213,EH38E1778762) | |ccre_description=PLS,CTCF-bound (EH38D2811213,EH38E1778762) | ||
|chr=chr15 | |chr=chr15 | ||
|cpg_percent=0.090909 | |cpg_percent=0.090909 | ||
|detailed_annotation= | |detailed_annotation=CpG-8450 | ||
|distance=0 | |distance=0 | ||
|distance_to_tss= | |distance_to_tss=1468 | ||
|end=75738631 | |end=75738631 | ||
|entrez_id= | |entrez_id=100128285 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.644444 | |gc_percent=0.644444 | ||
|gene_alias= | |gene_alias=DNM1DN8-2{{!}}DNM1DN8.2{{!}}DNM1DN8@{{!}}FKSG88 | ||
|gene_description= | |gene_description=dynamin 1 pseudogene 35 | ||
|gene_id=100128285 | |gene_id=100128285 | ||
|gene_name= | |gene_name=DNM1P35 | ||
|gene_source=HGNC:35182 | |gene_source=HGNC:35182 | ||
|gene_symbol=DNM1P35 | |gene_symbol=DNM1P35 | ||
|gene_synonyms=DNM1DN8-2 | |gene_synonyms=DNM1DN8-2 | ||
|gene_type= | |gene_type=pseudo | ||
|hgnc_mgi_id=HGNC:35182 | |hgnc_mgi_id=HGNC:35182 | ||
|nearest_ensembl= | |nearest_ensembl= | ||
|nearest_promoter_id= | |nearest_promoter_id=NR_024595 | ||
|nearest_refseq= | |nearest_refseq=NR_024595 | ||
|nearest_unigene= | |nearest_unigene=Hs.604066 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|species=human | |species=human | ||
|start= | |start=75738587 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
Revision as of 14:18, 23 June 2023
Basic information about the TSS
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| Source datasets | ||||||||||||||
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| Protocol | ||||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D2811213,EH38E1778762) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 1468 |
|---|---|
| Nearest PromoterID: | NR_024595 |
| Entrez ID: | 100128285 |
| Nearest Unigene: | Hs.604066 |
| Nearest Refseq: | NR_024595 |
| Nearest Ensembl: | |
| Gene Name: | DNM1P35 |
| Gene Alias: | DNM1DN8-2|DNM1DN8.2|DNM1DN8@|FKSG88 |
| Gene Description: | dynamin 1 pseudogene 35 |
| Gene Type: | pseudo |
| CpG%: | 0.090909 |
| GC%: | 0.644444 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.