TSS: Rfhg 180618.1: Difference between revisions
From referenceTSS
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=intron ( | |annotation=intron (NM_018723, intron 4 of 15) | ||
|ccre_category=dELS | |ccre_category=dELS | ||
|ccre_description=dELS (EH38D2841471,EH38E1799559) | |ccre_description=dELS (EH38D2841471,EH38E1799559) | ||
|chr=chr16 | |chr=chr16 | ||
|cpg_percent=0.000000 | |cpg_percent=0.000000 | ||
|detailed_annotation= | |detailed_annotation=intron (NM_018723, intron 4 of 15) | ||
|distance=0 | |distance=0 | ||
|distance_to_tss=- | |distance_to_tss=-28205 | ||
|end=7304644 | |end=7304644 | ||
|entrez_id= | |entrez_id=54715 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.555556 | |gc_percent=0.555556 | ||
|gene_alias= | |gene_alias=2BP1{{!}}A2BP1{{!}}FOX-1{{!}}FOX1{{!}}HRNBP1 | ||
|gene_description= | |gene_description=RNA binding fox-1 homolog 1 | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name=RBFOX1 | ||
|gene_source= | |gene_source= | ||
|gene_symbol= | |gene_symbol= | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|nearest_ensembl= | |nearest_ensembl=ENSG00000078328 | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_145892 | ||
|nearest_refseq= | |nearest_refseq=NM_018723 | ||
|nearest_unigene= | |nearest_unigene=Hs.459842 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|species=human | |species=human | ||
|start= | |start=7304636 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
Revision as of 15:25, 23 June 2023
Basic information about the TSS
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| Source datasets | ||||||||||||||
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| Protocol | ||||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | dELS (EH38D2841471,EH38E1799559) |
|---|---|
| Category: | dELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -28205 |
|---|---|
| Nearest PromoterID: | NM_145892 |
| Entrez ID: | 54715 |
| Nearest Unigene: | Hs.459842 |
| Nearest Refseq: | NM_018723 |
| Nearest Ensembl: | ENSG00000078328 |
| Gene Name: | RBFOX1 |
| Gene Alias: | 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 |
| Gene Type: | protein-coding |
| CpG%: | 0.000000 |
| GC%: | 0.555556 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |