TSS: Rfhg 189367.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=promoter-TSS ( | |annotation=promoter-TSS (NR_136403) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
|ccre_description=PLS,CTCF-bound (EH38D2906081,EH38E1844523) | |ccre_description=PLS,CTCF-bound (EH38D2906081,EH38E1844523) | ||
|chr=chr17 | |chr=chr17 | ||
|cpg_percent=0.125000 | |cpg_percent=0.125000 | ||
|detailed_annotation= | |detailed_annotation=promoter-TSS (NR_136403) | ||
|distance=154 | |distance=154 | ||
|distance_to_tss= | |distance_to_tss=95 | ||
|end=7583758 | |end=7583758 | ||
|entrez_id= | |entrez_id=9526 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.727273 | |gc_percent=0.727273 | ||
|gene_alias= | |gene_alias=CDGIF{{!}}HBEBP2BPA{{!}}Lec35{{!}}My008{{!}}PP3958{{!}}PQLC5{{!}}SL15{{!}}SLC66A5 | ||
|gene_description= | |gene_description=mannose-P-dolichol utilization defect 1 | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name=MPDU1 | ||
|gene_source= | |gene_source= | ||
|gene_symbol= | |gene_symbol= | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|nearest_ensembl= | |nearest_ensembl=ENSG00000129255 | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_001330073 | ||
|nearest_refseq= | |nearest_refseq=NM_004870 | ||
|nearest_unigene= | |nearest_unigene=Hs.246381 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|species=human | |species=human | ||
|start= | |start=7583726 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
Revision as of 17:57, 23 June 2023
Basic information about the TSS
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| Source datasets | ||||||||||||||
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| Protocol | ||||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D2906081,EH38E1844523) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 95 |
|---|---|
| Nearest PromoterID: | NM_001330073 |
| Entrez ID: | 9526 |
| Nearest Unigene: | Hs.246381 |
| Nearest Refseq: | NM_004870 |
| Nearest Ensembl: | ENSG00000129255 |
| Gene Name: | MPDU1 |
| Gene Alias: | CDGIF|HBEBP2BPA|Lec35|My008|PP3958|PQLC5|SL15|SLC66A5 |
| Gene Description: | mannose-P-dolichol utilization defect 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.125000 |
| GC%: | 0.727273 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |