TSS: Rfhg 192267.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetailV4 |annotation=promoter-TSS (ENST00000610751.4) |ccre_category=PLS |ccre_description=PLS,CTCF-bound (EH38D2926438,EH38E1858749) |chr=chr17 |cpg_percent=0.000000 |de...") |
No edit summary |
||
| Line 1: | Line 1: | ||
{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=promoter-TSS ( | |annotation=promoter-TSS (NM_032965) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
|ccre_description=PLS,CTCF-bound (EH38D2926438,EH38E1858749) | |ccre_description=PLS,CTCF-bound (EH38D2926438,EH38E1858749) | ||
|chr=chr17 | |chr=chr17 | ||
|cpg_percent=0.000000 | |cpg_percent=0.000000 | ||
|detailed_annotation= | |detailed_annotation=promoter-TSS (NM_032965) | ||
|distance=9 | |distance=9 | ||
|distance_to_tss=- | |distance_to_tss=-16 | ||
|end=36001577 | |end=36001577 | ||
|entrez_id= | |entrez_id=6359 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.500000 | |gc_percent=0.500000 | ||
|gene_alias= | |gene_alias=HCC-2{{!}}HMRP-2B{{!}}LKN-1{{!}}LKN1{{!}}MIP-1 delta{{!}}MIP-1D{{!}}MIP-5{{!}}MRP-2B{{!}}NCC-3{{!}}NCC3{{!}}SCYA15{{!}}SCYL3{{!}}SY15 | ||
|gene_description= | |gene_description=C-C motif chemokine ligand 15 | ||
|gene_id=6359 | |gene_id=6359 | ||
|gene_name= | |gene_name=CCL15 | ||
|gene_source=HGNC:10613 | |gene_source=HGNC:10613 | ||
|gene_symbol=CCL15 | |gene_symbol=CCL15 | ||
|gene_synonyms=HCC-2 HMRP-2B Lkn-1 MIP-1d MIP-5 NCC-3 SCYL3 | |gene_synonyms=HCC-2 HMRP-2B Lkn-1 MIP-1d MIP-5 NCC-3 SCYL3 | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:10613 | |hgnc_mgi_id=HGNC:10613 | ||
|nearest_ensembl= | |nearest_ensembl=ENSG00000275718 | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_032965 | ||
|nearest_refseq= | |nearest_refseq=NM_004167 | ||
|nearest_unigene= | |nearest_unigene=Hs.272493 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|species=human | |species=human | ||
|start= | |start=36001562 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
Revision as of 18:46, 23 June 2023
Basic information about the TSS
|
| |||||||||||||
| Source datasets | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | ||||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D2926438,EH38E1858749) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
|
|
TATA-Box annotation
| Distance to TSS: | -16 |
|---|---|
| Nearest PromoterID: | NM_032965 |
| Entrez ID: | 6359 |
| Nearest Unigene: | Hs.272493 |
| Nearest Refseq: | NM_004167 |
| Nearest Ensembl: | ENSG00000275718 |
| Gene Name: | CCL15 |
| Gene Alias: | HCC-2|HMRP-2B|LKN-1|LKN1|MIP-1 delta|MIP-1D|MIP-5|MRP-2B|NCC-3|NCC3|SCYA15|SCYL3|SY15 |
| Gene Type: | protein-coding |
| CpG%: | 0.000000 |
| GC%: | 0.500000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.