TSS: Rfhg 200958.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetailV4 |annotation=Intergenic |ccre_category=dELS |ccre_description=dELS (EH38D2975850,EH38E1895887) |chr=chr18 |cpg_percent=0.076923 |detailed_annotation=Intergenic |d...") |
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|chr=chr18 | |chr=chr18 | ||
|cpg_percent=0.076923 | |cpg_percent=0.076923 | ||
|detailed_annotation= | |detailed_annotation=LTR56{{!}}LTR{{!}}ERV1 | ||
|distance=0 | |distance=0 | ||
|distance_to_tss=- | |distance_to_tss=-28497 | ||
|end=3383443 | |end=3383443 | ||
|entrez_id= | |entrez_id=7050 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.592593 | |gc_percent=0.592593 | ||
|gene_alias= | |gene_alias=HPE4{{!}}TGIF | ||
|gene_description= | |gene_description=TGFB induced factor homeobox 1 | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name=TGIF1 | ||
|gene_source=HGNC:52714 | |gene_source=HGNC:52714 | ||
|gene_symbol=LINC01895 | |gene_symbol=LINC01895 | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:52714 | |hgnc_mgi_id=HGNC:52714 | ||
|nearest_ensembl= | |nearest_ensembl=ENSG00000177426 | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_174886 | ||
|nearest_refseq= | |nearest_refseq=NM_003244 | ||
|nearest_unigene= | |nearest_unigene=Hs.373550 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|species=human | |species=human | ||
|start= | |start=3383417 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
Revision as of 21:19, 23 June 2023
Basic information about the TSS
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| Source datasets | ||||||||||||||||
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| Protocol | ||||||||||||||||
| TSS cluster detected* | ||||||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | dELS (EH38D2975850,EH38E1895887) |
|---|---|
| Category: | dELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -28497 |
|---|---|
| Nearest PromoterID: | NM_174886 |
| Entrez ID: | 7050 |
| Nearest Unigene: | Hs.373550 |
| Nearest Refseq: | NM_003244 |
| Nearest Ensembl: | ENSG00000177426 |
| Gene Name: | TGIF1 |
| Gene Alias: | HPE4|TGIF |
| Gene Type: | protein-coding |
| CpG%: | 0.076923 |
| GC%: | 0.592593 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.