TSS: Rfhg 207436.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetailV4 |annotation=promoter-TSS (ENST00000480726.1) |ccre_category=dELS |ccre_description=dELS,CTCF-bound (EH38D3040588,EH38E1938180) |chr=chr19 |cpg_percent=0.000000 |...") |
No edit summary |
||
| Line 1: | Line 1: | ||
{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation= | |annotation=intron (NM_001103167, intron 2 of 3) | ||
|ccre_category=dELS | |ccre_category=dELS | ||
|ccre_description=dELS,CTCF-bound (EH38D3040588,EH38E1938180) | |ccre_description=dELS,CTCF-bound (EH38D3040588,EH38E1938180) | ||
|chr=chr19 | |chr=chr19 | ||
|cpg_percent=0.000000 | |cpg_percent=0.000000 | ||
|detailed_annotation= | |detailed_annotation=intron (NM_001103167, intron 2 of 3) | ||
|distance=0 | |distance=0 | ||
|distance_to_tss= | |distance_to_tss=3931 | ||
|end=10305657 | |end=10305657 | ||
|entrez_id= | |entrez_id=100125288 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.580645 | |gc_percent=0.580645 | ||
|gene_alias= | |gene_alias=GATAD3{{!}}GLP-1{{!}}GLP1 | ||
|gene_description= | |gene_description=zinc finger GATA like protein 1 | ||
|gene_id=100125288 | |gene_id=100125288 | ||
|gene_name= | |gene_name=ZGLP1 | ||
|gene_source=HGNC:37245 | |gene_source=HGNC:37245 | ||
|gene_symbol=ZGLP1 | |gene_symbol=ZGLP1 | ||
|gene_synonyms=GATAD3 GLP-1 GLP1 | |gene_synonyms=GATAD3 GLP-1 GLP1 | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:37245 | |hgnc_mgi_id=HGNC:37245 | ||
|nearest_ensembl= | |nearest_ensembl=ENSG00000220201 | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_001103167 | ||
|nearest_refseq= | |nearest_refseq=NM_001103167 | ||
|nearest_unigene= | |nearest_unigene=Hs.709296 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|species=human | |species=human | ||
|start= | |start=10305596 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
Revision as of 23:14, 23 June 2023
Basic information about the TSS
|
| |||||||||||||||
| Source datasets | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | ||||||||||||||||
| TSS cluster detected* | ||||||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | dELS,CTCF-bound (EH38D3040588,EH38E1938180) |
|---|---|
| Category: | dELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
|
|
TATA-Box annotation
| Distance to TSS: | 3931 |
|---|---|
| Nearest PromoterID: | NM_001103167 |
| Entrez ID: | 100125288 |
| Nearest Unigene: | Hs.709296 |
| Nearest Refseq: | NM_001103167 |
| Nearest Ensembl: | ENSG00000220201 |
| Gene Name: | ZGLP1 |
| Gene Alias: | GATAD3|GLP-1|GLP1 |
| Gene Description: | zinc finger GATA like protein 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.000000 |
| GC%: | 0.580645 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.