TSS: Rfhg 213785.1: Difference between revisions
From referenceTSS
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation= | |annotation=Intergenic | ||
|ccre_category=dELS | |ccre_category=dELS | ||
|ccre_description=dELS (EH38D3067279,EH38E1958311) | |ccre_description=dELS (EH38D3067279,EH38E1958311) | ||
|chr=chr19 | |chr=chr19 | ||
|cpg_percent=0.115385 | |cpg_percent=0.115385 | ||
|detailed_annotation= | |detailed_annotation=CpG | ||
|distance=0 | |distance=0 | ||
|distance_to_tss= | |distance_to_tss=-15347 | ||
|end=46428950 | |end=46428950 | ||
|entrez_id= | |entrez_id=83987 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.683544 | |gc_percent=0.683544 | ||
|gene_alias= | |gene_alias=3M3{{!}}PPP1R20{{!}}p90 | ||
|gene_description= | |gene_description=coiled-coil domain containing 8 | ||
|gene_id=110806277 | |gene_id=110806277 | ||
|gene_name= | |gene_name=CCDC8 | ||
|gene_source=HGNC:53427 | |gene_source=HGNC:53427 | ||
|gene_symbol=PNMA8C | |gene_symbol=PNMA8C | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:53427 | |hgnc_mgi_id=HGNC:53427 | ||
|nearest_ensembl= | |nearest_ensembl=ENSG00000169515 | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_032040 | ||
|nearest_refseq= | |nearest_refseq=NM_032040 | ||
|nearest_unigene= | |nearest_unigene=Hs.97876 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|species=human | |species=human | ||
|start= | |start=46428872 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
Revision as of 01:03, 24 June 2023
Basic information about the TSS
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| Source datasets | ||||||||||||||
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| Protocol | ||||||||||||||
| TSS cluster detected* | 2 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | dELS (EH38D3067279,EH38E1958311) |
|---|---|
| Category: | dELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -15347 |
|---|---|
| Nearest PromoterID: | NM_032040 |
| Entrez ID: | 83987 |
| Nearest Unigene: | Hs.97876 |
| Nearest Refseq: | NM_032040 |
| Nearest Ensembl: | ENSG00000169515 |
| Gene Name: | CCDC8 |
| Gene Alias: | 3M3|PPP1R20|p90 |
| Gene Type: | protein-coding |
| CpG%: | 0.115385 |
| GC%: | 0.683544 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.