TSS: Rfhg 227431.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=promoter-TSS ( | |annotation=promoter-TSS (NM_033070) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
|ccre_description=PLS,CTCF-bound (EH38D3350725,EH38E2148471) | |ccre_description=PLS,CTCF-bound (EH38D3350725,EH38E2148471) | ||
|chr=chr22 | |chr=chr22 | ||
|cpg_percent=0.129032 | |cpg_percent=0.129032 | ||
|detailed_annotation= | |detailed_annotation=promoter-TSS (NM_033070) | ||
|distance=5 | |distance=5 | ||
|distance_to_tss=- | |distance_to_tss=-26 | ||
|end=17159379 | |end=17159379 | ||
|entrez_id= | |entrez_id=100130717 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.625000 | |gc_percent=0.625000 | ||
|gene_alias= | |gene_alias=CECR4{{!}}CECR5-AS1{{!}}NCRNA00017 | ||
|gene_description= | |gene_description=HDHD5 antisense RNA 1 | ||
|gene_id=100130717 | |gene_id=100130717 | ||
|gene_name=HDHD5 | |gene_name=HDHD5-AS1 | ||
|gene_source=HGNC:1842 | |gene_source=HGNC:1842 | ||
|gene_symbol=HDHD5-AS1 | |gene_symbol=HDHD5-AS1 | ||
|gene_synonyms=NCRNA00017 | |gene_synonyms=NCRNA00017 | ||
|gene_type= | |gene_type=ncRNA | ||
|hgnc_mgi_id=HGNC:1842 | |hgnc_mgi_id=HGNC:1842 | ||
|nearest_ensembl= | |nearest_ensembl=ENSG00000185837 | ||
|nearest_promoter_id= | |nearest_promoter_id=NR_024483 | ||
|nearest_refseq= | |nearest_refseq=NR_024482 | ||
|nearest_unigene= | |nearest_unigene=Hs.660066 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|species=human | |species=human | ||
|start= | |start=17159348 | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= | ||
Revision as of 04:49, 24 June 2023
Basic information about the TSS
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| Source datasets | ||||||||||||||
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| Protocol | ||||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D3350725,EH38E2148471) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -26 |
|---|---|
| Nearest PromoterID: | NR_024483 |
| Entrez ID: | 100130717 |
| Nearest Unigene: | Hs.660066 |
| Nearest Refseq: | NR_024482 |
| Nearest Ensembl: | ENSG00000185837 |
| Gene Name: | HDHD5-AS1 |
| Gene Alias: | CECR4|CECR5-AS1|NCRNA00017 |
| Gene Description: | HDHD5 antisense RNA 1 |
| Gene Type: | ncRNA |
| CpG%: | 0.129032 |
| GC%: | 0.625000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.