TSS: Rfmm 131123.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetailV4 |annotation=intron (ENSMUST00000163924.2, intron 1 of 7) |ccre_category=pELS |ccre_description=pELS (EM10D2471776,EM10E1019889) |chr=chr14 |cpg_percent=0.135593...") |
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=intron ( | |annotation=intron (NM_025682.4, intron 1 of 8) | ||
|ccre_category=pELS | |ccre_category=pELS | ||
|ccre_description=pELS (EM10D2471776,EM10E1019889) | |ccre_description=pELS (EM10D2471776,EM10E1019889) | ||
|chr=chr14 | |chr=chr14 | ||
|cpg_percent=0.135593 | |cpg_percent=0.135593 | ||
|detailed_annotation= | |detailed_annotation=-intron (NM_001360420.1, intron 1 of 7) | ||
|distance=0 | |distance=0 | ||
|distance_to_tss= | |distance_to_tss=647 | ||
|end=57015158 | |end=57015158 | ||
|entrez_id= | |entrez_id=Pspc1 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.716667 | |gc_percent=0.716667 | ||
| Line 15: | Line 15: | ||
|gene_description= | |gene_description= | ||
|gene_id=100125977 | |gene_id=100125977 | ||
|gene_name= | |gene_name=Pspc1 | ||
|gene_source=MGI:3704445 | |gene_source=MGI:3704445 | ||
|gene_symbol=Gm10034 | |gene_symbol=Gm10034 | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type= | ||
|hgnc_mgi_id=MGI:3704445 | |hgnc_mgi_id=MGI:3704445 | ||
|nearest_ensembl= | |nearest_ensembl= | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_025682.4 | ||
|nearest_refseq= | |nearest_refseq= | ||
|nearest_unigene= | |nearest_unigene=NM_001360420 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|species=mouse | |species=mouse | ||
|start= | |start=57015099 | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= | ||
Revision as of 16:21, 25 June 2023
Basic information about the TSS
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| Source datasets | ||||||||||||||
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| Protocol | ||||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 5)
cCREs annotation
| Description: | pELS (EM10D2471776,EM10E1019889) |
|---|---|
| Category: | pELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 647 |
|---|---|
| Nearest PromoterID: | NM_025682.4 |
| Entrez ID: | Pspc1 |
| Nearest Unigene: | NM_001360420 |
| Nearest Refseq: | |
| Nearest Ensembl: | |
| Gene Name: | Pspc1 |
| Gene Alias: | |
| Gene Description: | |
| Gene Type: | |
| CpG%: | 0.135593 |
| GC%: | 0.716667 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.