TSS: Rfmm 132768.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetailV4 |annotation=intron (ENSMUST00000228252.2, intron 1 of 18) |ccre_category=pELS |ccre_description=pELS,CTCF-bound (EM10D2478406,EM10E1022721) |chr=chr14 |cpg_perce...") |
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=intron ( | |annotation=intron (XR_001781129.2, intron 1 of 19) | ||
|ccre_category=pELS | |ccre_category=pELS | ||
|ccre_description=pELS,CTCF-bound (EM10D2478406,EM10E1022721) | |ccre_description=pELS,CTCF-bound (EM10D2478406,EM10E1022721) | ||
|chr=chr14 | |chr=chr14 | ||
|cpg_percent=0.047619 | |cpg_percent=0.047619 | ||
|detailed_annotation= | |detailed_annotation=-intron (NM_001033439.3, intron 1 of 19) | ||
|distance=-176 | |distance=-176 | ||
|distance_to_tss= | |distance_to_tss=902 | ||
|end=75184426 | |end=75184426 | ||
|entrez_id= | |entrez_id=Lrch1 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.651163 | |gc_percent=0.651163 | ||
| Line 15: | Line 15: | ||
|gene_description= | |gene_description= | ||
|gene_id=100049170 | |gene_id=100049170 | ||
|gene_name= | |gene_name=Lrch1 | ||
|gene_source=MGI:3704448 | |gene_source=MGI:3704448 | ||
|gene_symbol=4632427I20Rik | |gene_symbol=4632427I20Rik | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type= | ||
|hgnc_mgi_id=MGI:3704448 | |hgnc_mgi_id=MGI:3704448 | ||
|nearest_ensembl= | |nearest_ensembl= | ||
|nearest_promoter_id= | |nearest_promoter_id=XM_036158692.1 | ||
|nearest_refseq= | |nearest_refseq= | ||
|nearest_unigene= | |nearest_unigene=NM_001252132 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|species=mouse | |species=mouse | ||
|start= | |start=75184384 | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= | ||
Revision as of 16:46, 25 June 2023
Basic information about the TSS
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| Source datasets | ||||||||||||||
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| Protocol | ||||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 5)
cCREs annotation
| Description: | pELS,CTCF-bound (EM10D2478406,EM10E1022721) |
|---|---|
| Category: | pELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 902 |
|---|---|
| Nearest PromoterID: | XM_036158692.1 |
| Entrez ID: | Lrch1 |
| Nearest Unigene: | NM_001252132 |
| Nearest Refseq: | |
| Nearest Ensembl: | |
| Gene Name: | Lrch1 |
| Gene Alias: | |
| Gene Description: | |
| Gene Type: | |
| CpG%: | 0.047619 |
| GC%: | 0.651163 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.