TSS: Rfmm 144812.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetailV4 |annotation=promoter-TSS (ENSMUST00000232600.2) |ccre_category=N |ccre_description=N |chr=chr16 |cpg_percent=0.016949 |detailed_annotation=protein_coding-promote...") |
No edit summary |
||
| Line 1: | Line 1: | ||
{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=promoter-TSS ( | |annotation=promoter-TSS (XM_003085107.4) | ||
|ccre_category=N | |ccre_category=N | ||
|ccre_description=N | |ccre_description=N | ||
|chr=chr16 | |chr=chr16 | ||
|cpg_percent=0.016949 | |cpg_percent=0.016949 | ||
|detailed_annotation= | |detailed_annotation=-promoter-TSS (XM_003085107.4) | ||
|distance=-8 | |distance=-8 | ||
|distance_to_tss= | |distance_to_tss=8 | ||
|end=45352405 | |end=45352405 | ||
|entrez_id= | |entrez_id=Gm17783 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.416667 | |gc_percent=0.416667 | ||
| Line 15: | Line 15: | ||
|gene_description= | |gene_description= | ||
|gene_id=100047671 | |gene_id=100047671 | ||
|gene_name= | |gene_name=Gm17783 | ||
|gene_source=MGI:5009947 | |gene_source=MGI:5009947 | ||
|gene_symbol=Cd200l2 | |gene_symbol=Cd200l2 | ||
|gene_synonyms=Gm17783 iSEC2 | |gene_synonyms=Gm17783 iSEC2 | ||
|gene_type= | |gene_type= | ||
|hgnc_mgi_id=MGI:5009947 | |hgnc_mgi_id=MGI:5009947 | ||
|nearest_ensembl= | |nearest_ensembl= | ||
|nearest_promoter_id= | |nearest_promoter_id=XM_006522827.3 | ||
|nearest_refseq= | |nearest_refseq= | ||
|nearest_unigene= | |nearest_unigene=XM_003085107 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|species=mouse | |species=mouse | ||
|start= | |start=45352346 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
Revision as of 19:51, 25 June 2023
Basic information about the TSS
|
| |||||||||||||
| Source datasets | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | ||||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 5)
cCREs annotation
| Description: | - |
|---|---|
| Category: | - |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
|
|
TATA-Box annotation
| Distance to TSS: | 8 |
|---|---|
| Nearest PromoterID: | XM_006522827.3 |
| Entrez ID: | Gm17783 |
| Nearest Unigene: | XM_003085107 |
| Nearest Refseq: | |
| Nearest Ensembl: | |
| Gene Name: | Gm17783 |
| Gene Alias: | |
| Gene Description: | |
| Gene Type: | |
| CpG%: | 0.016949 |
| GC%: | 0.416667 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.