TSS: Rfmm 170873.1: Difference between revisions

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(Created page with "{{TSSDetailV4 |annotation=promoter-TSS (ENSMUST00000130879.2) |ccre_category=N |ccre_description=N |chr=chrX |cpg_percent=0.000000 |detailed_annotation=protein_coding-promoter...")
 
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{{TSSDetailV4
{{TSSDetailV4
|annotation=promoter-TSS (ENSMUST00000130879.2)
|annotation=promoter-TSS (NM_030688.2)
|ccre_category=N
|ccre_category=N
|ccre_description=N
|ccre_description=N
|chr=chrX
|chr=chrX
|cpg_percent=0.000000
|cpg_percent=0.000000
|detailed_annotation=protein_coding-promoter-TSS (ENSMUST00000130879.2)
|detailed_annotation=-promoter-TSS (NM_030688.2)
|distance=11
|distance=11
|distance_to_tss=174
|distance_to_tss=28
|end=136471533
|end=136471533
|entrez_id=ENSMUSG00000059203
|entrez_id=Il1rapl2
|focus_ratio=NA
|focus_ratio=NA
|gc_percent=0.500000
|gc_percent=0.500000
Line 15: Line 15:
|gene_description=
|gene_description=
|gene_id=60367
|gene_id=60367
|gene_name=interleukin 1 receptor accessory protein-like 2
|gene_name=Il1rapl2
|gene_source=MGI:1913106
|gene_source=MGI:1913106
|gene_symbol=Il1rapl2
|gene_symbol=Il1rapl2
|gene_synonyms=
|gene_synonyms=
|gene_type=protein_coding
|gene_type=
|hgnc_mgi_id=MGI:1913106
|hgnc_mgi_id=MGI:1913106
|nearest_ensembl=
|nearest_ensembl=
|nearest_promoter_id=ENSMUST00000113063.8
|nearest_promoter_id=NM_030688.2
|nearest_refseq=
|nearest_refseq=
|nearest_unigene=ENSMUST00000113063
|nearest_unigene=NM_030688
|peak_score=1
|peak_score=1
|reftss_version=4
|reftss_version=4
|species=mouse
|species=mouse
|start=136471529
|start=136471530
|strand=+
|strand=+
|tata_box=
|tata_box=

Revision as of 02:26, 26 June 2023

Basic information about the TSS


TSS ID:rfmm_170873.1
Species:mouse
Chr:chrX
Start:136471530
End:136471533
Strand:+
Source datasets
Protocol
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 5)


cCREs annotation


Description:-
Category:-

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation


Nearest transcript id and distance:AJ277831:11
GeneID:60367
HGNC/MGI_ID:MGI:1913106
UniProt_ID:
Nearer transcript ids and distances:
    Gene_name:Il1rapl2
    Gene_symbol:Il1rapl2
    Gene_synonyms:
    Gene_source:MGI:1913106



    TATA-Box annotation


    Distance to TSS:28
    Nearest PromoterID:NM_030688.2
    Entrez ID:Il1rapl2
    Nearest Unigene:NM_030688
    Nearest Refseq:
    Nearest Ensembl:
    Gene Name:Il1rapl2
    Gene Alias:
    Gene Type:
    CpG%:0.000000
    GC%:0.500000
    TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



    TSS expression

    Expression data not found.