TSS: Rfmm 42583.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetailV4 |annotation=promoter-TSS (ENSMUST00000118533.2) |ccre_category=N |ccre_description=N |chr=chr5 |cpg_percent=0.000000 |detailed_annotation=processed_pseudogene-pr...") |
No edit summary |
||
Line 1: | Line 1: | ||
{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=promoter-TSS ( | |annotation=promoter-TSS (NR_003373.1) | ||
|ccre_category=N | |ccre_category=N | ||
|ccre_description=N | |ccre_description=N | ||
|chr=chr5 | |chr=chr5 | ||
|cpg_percent=0.000000 | |cpg_percent=0.000000 | ||
|detailed_annotation= | |detailed_annotation=-promoter-TSS (NR_003373.1) | ||
|distance=0 | |distance=0 | ||
|distance_to_tss= | |distance_to_tss=5 | ||
|end=3286403 | |end=3286403 | ||
|entrez_id= | |entrez_id=Gm15772 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.437500 | |gc_percent=0.437500 | ||
Line 15: | Line 15: | ||
|gene_description= | |gene_description= | ||
|gene_id=100034726 | |gene_id=100034726 | ||
|gene_name= | |gene_name=Gm15772 | ||
|gene_source=MGI:3805541 | |gene_source=MGI:3805541 | ||
|gene_symbol=Gm15772 | |gene_symbol=Gm15772 | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type= | ||
|hgnc_mgi_id=MGI:3805541 | |hgnc_mgi_id=MGI:3805541 | ||
|nearest_ensembl= | |nearest_ensembl= | ||
|nearest_promoter_id= | |nearest_promoter_id=NR_003373.1 | ||
|nearest_refseq= | |nearest_refseq= | ||
|nearest_unigene= | |nearest_unigene=NR_003373 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|species=mouse | |species=mouse | ||
|start= | |start=3286388 | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= |
Revision as of 09:16, 26 June 2023
Basic information about the TSS
|
| |||||||||||||
Source datasets | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Protocol | ||||||||||||||
TSS cluster detected* | 2 |
* The number of TSS cluster called data-sets (maximum 5)
cCREs annotation
Description: | - |
---|---|
Category: | - |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
|
|
TATA-Box annotation
Distance to TSS: | 5 |
---|---|
Nearest PromoterID: | NR_003373.1 |
Entrez ID: | Gm15772 |
Nearest Unigene: | NR_003373 |
Nearest Refseq: | |
Nearest Ensembl: | |
Gene Name: | Gm15772 |
Gene Alias: | |
Gene Description: | |
Gene Type: | |
CpG%: | 0.000000 |
GC%: | 0.437500 |
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.