TSS: Hg 101829.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0 |distance_to_tss=10495 |entrez_id=83856 |gc_percent=0.512438 |gene_alias=CCDC10|CSDUFD1|FSD1CL|FSD1NL|MIR1 |gene_description=fibronectin type III an...") |
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{{TSSDetail | {{TSSDetail | ||
|CSDUFD1= | |||
|FSD1CL= | |||
|FSD1NL= | |||
|MIR1= | |||
|chr=chr9 | |||
|cpg_percent=0 | |cpg_percent=0 | ||
|distance= | |||
|distance_to_tss=10495 | |distance_to_tss=10495 | ||
|end=105458530 | |||
|entrez_id=83856 | |entrez_id=83856 | ||
|gc_percent=0.512438 | |gc_percent=0.512438 | ||
Line 12: | Line 19: | ||
|nearest_refseq=NM_031919 | |nearest_refseq=NM_031919 | ||
|nearest_unigene=Hs.136901 | |nearest_unigene=Hs.136901 | ||
|num_trans=0 | |||
|species=human | |||
|start=105458527 | |||
|strand=- | |||
|tata_box="-32(GCCCATAAAAAC,-,0.00),-30(CCATAAAAACCC,+,0.00)" | |tata_box="-32(GCCCATAAAAAC,-,0.00),-30(CCATAAAAACCC,+,0.00)" | ||
|transcript_name= | |||
|tss_classification=no | |||
|tss_id=hg_101829.1 | |tss_id=hg_101829.1 | ||
|tss_score=1 | |||
}} | }} |
Revision as of 19:00, 8 March 2018
Basic information about the TSS
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TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
Distance to TSS: | 10495 |
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Nearest PromoterID: | NM_031919 |
Entrez ID: | 83856 |
Nearest Unigene: | Hs.136901 |
Nearest Refseq: | NM_031919 |
Nearest Ensembl: | ENSG00000106701 |
Gene Name: | FSD1L |
Gene Alias: | CCDC10 |
Gene Description: | fibronectin type III and SPRY domain containing 1 like |
Gene Type: | protein-coding |
CpG%: | 0 |
GC%: | 0.512438 |
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-32(GCCCATAAAAAC,-,0.00),-30(CCATAAAAACCC,+,0.00)" |