TSS: Rfmm 86713.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetailV4 |annotation=promoter-TSS (ENSMUST00000215445.2) |ccre_category=N |ccre_description=N |chr=chr9 |cpg_percent=0.058824 |detailed_annotation=TEC-promoter-TSS (ENSMU...") |
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation= | |annotation=exon (NM_007468.2, exon 3 of 3) | ||
|ccre_category=N | |ccre_category=N | ||
|ccre_description=N | |ccre_description=N | ||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.058824 | |cpg_percent=0.058824 | ||
|detailed_annotation= | |detailed_annotation=-exon (NM_007468.2, exon 3 of 3) | ||
|distance=372 | |distance=372 | ||
|distance_to_tss= | |distance_to_tss=1577 | ||
|end=46153736 | |end=46153736 | ||
|entrez_id= | |entrez_id=Apoa4 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.571429 | |gc_percent=0.571429 | ||
| Line 15: | Line 15: | ||
|gene_description= | |gene_description= | ||
|gene_id=100048894 | |gene_id=100048894 | ||
|gene_name= | |gene_name=Apoa4 | ||
|gene_source=MGI:3704335 MGI:6096530 | |gene_source=MGI:3704335 MGI:6096530 | ||
|gene_symbol=Gm10680 Gm47528 | |gene_symbol=Gm10680 Gm47528 | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type= | ||
|hgnc_mgi_id=MGI:3704335 MGI:6096530 | |hgnc_mgi_id=MGI:3704335 MGI:6096530 | ||
|nearest_ensembl= | |nearest_ensembl= | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_007468.2 | ||
|nearest_refseq= | |nearest_refseq= | ||
|nearest_unigene= | |nearest_unigene=NM_007468 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|species=mouse | |species=mouse | ||
|start= | |start=46153702 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
Revision as of 20:30, 26 June 2023
Basic information about the TSS
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| Source datasets | ||||||||||||||
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| Protocol | ||||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 5)
cCREs annotation
| Description: | - |
|---|---|
| Category: | - |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 1577 |
|---|---|
| Nearest PromoterID: | NM_007468.2 |
| Entrez ID: | Apoa4 |
| Nearest Unigene: | NM_007468 |
| Nearest Refseq: | |
| Nearest Ensembl: | |
| Gene Name: | Apoa4 |
| Gene Alias: | |
| Gene Description: | |
| Gene Type: | |
| CpG%: | 0.058824 |
| GC%: | 0.571429 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.