TSS: Rfmm 97801.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation= | |annotation=exon (NM_001100606.1, exon 2 of 2) | ||
|ccre_category=pELS | |ccre_category=pELS | ||
|ccre_description=pELS (EM10D1171327,EM10E0481459) | |ccre_description=pELS (EM10D1171327,EM10E0481459) | ||
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.066667 | |cpg_percent=0.066667 | ||
|detailed_annotation= | |detailed_annotation=-exon (NM_001100606.1, exon 2 of 2) | ||
|distance=0 | |distance=0 | ||
|distance_to_tss=- | |distance_to_tss=-2674 | ||
|end=80442435 | |end=80442435 | ||
|entrez_id= | |entrez_id=Mir6912 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.645161 | |gc_percent=0.645161 | ||
Line 15: | Line 15: | ||
|gene_description= | |gene_description= | ||
|gene_id=100113398 | |gene_id=100113398 | ||
|gene_name= | |gene_name=Mir6912 | ||
|gene_source=MGI:1924344 | |gene_source=MGI:1924344 | ||
|gene_symbol=Adat3 | |gene_symbol=Adat3 | ||
|gene_synonyms=A430024H01Rik | |gene_synonyms=A430024H01Rik | ||
|gene_type= | |gene_type= | ||
|hgnc_mgi_id=MGI:1924344 | |hgnc_mgi_id=MGI:1924344 | ||
|nearest_ensembl= | |nearest_ensembl= | ||
|nearest_promoter_id= | |nearest_promoter_id=NR_105877.1 | ||
|nearest_refseq= | |nearest_refseq= | ||
|nearest_unigene= | |nearest_unigene=NR_105877 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|species=mouse | |species=mouse | ||
|start= | |start=80442405 | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= |
Revision as of 23:21, 26 June 2023
Basic information about the TSS
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Source datasets | ||||||||||||||
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Protocol | ||||||||||||||
TSS cluster detected* | 1 |
* The number of TSS cluster called data-sets (maximum 5)
cCREs annotation
Description: | pELS (EM10D1171327,EM10E0481459) |
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Category: | pELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
Distance to TSS: | -2674 |
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Nearest PromoterID: | NR_105877.1 |
Entrez ID: | Mir6912 |
Nearest Unigene: | NR_105877 |
Nearest Refseq: | |
Nearest Ensembl: | |
Gene Name: | Mir6912 |
Gene Alias: | |
Gene Description: | |
Gene Type: | |
CpG%: | 0.066667 |
GC%: | 0.645161 |
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.