TSS: Rfhg 100138.1: Difference between revisions

Revision as of 14:42, 6 December 2023

Basic information about the TSS

TSS ID:	rfhg_100138.1
Species:	human
Chr:	chr7

Start:	130910516
End:	130910526
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	-
Category:	-

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	LINC-PINT
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	2789
Nearest PromoterID:	NR_034120
Entrez ID:	378805
Nearest Unigene:	Hs.150556
Nearest Refseq:	NM_001085379
Nearest Ensembl:	ENSG00000231721
Gene Name:	LINC-PINT
Gene Alias:	LincRNA-Pint\|MKLN1-AS1\|PINT
Gene Type:	ncRNA
CpG%:	0.100000
GC%:	0.454545
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 21: / Line 21: @@
 |gene_type=ncRNA
 |hgnc_mgi_id=
+|methods=CAGE
 |nearest_ensembl=ENSG00000231721
 |nearest_promoter_id=NR_034120
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5
 |species=human
 |start=130910516