TSS: Rfhg 101036.1: Difference between revisions

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|gene_type=protein-coding
|gene_type=protein-coding
|hgnc_mgi_id=HGNC:44112
|hgnc_mgi_id=HGNC:44112
|methods=CAGE
|nearest_ensembl=ENSG00000261115
|nearest_ensembl=ENSG00000261115
|nearest_promoter_id=NM_001195278
|nearest_promoter_id=NM_001195278
Line 27: Line 28:
|peak_score=1
|peak_score=1
|reftss_version=4
|reftss_version=4
|source_datasets=FANTOM5
|species=human
|species=human
|start=141074038
|start=141074038

Revision as of 14:58, 6 December 2023

Basic information about the TSS

TSS ID:rfhg_101036.1
Species:human
Chr:chr7
Start:141074038
End:141074085
Strand:+
Source datasetsFANTOM5
ProtocolCAGE
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:pELS (EH38D4039954,EH38E2596740)
Category:pELS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENST00000565468.6:0
GeneID:100507421
HGNC/MGI_ID:HGNC:44112
UniProt_ID:H3BS89
Nearer transcript ids and distances:
    Gene_name:TMEM178B
    Gene_symbol:TMEM178B
    Gene_synonyms:DKFZp547G036
    Gene_source:HGNC:44112



    TATA-Box annotation

    Distance to TSS:-3
    Nearest PromoterID:NM_001195278
    Entrez ID:100507421
    Nearest Unigene:Hs.283851
    Nearest Refseq:NM_001195278
    Nearest Ensembl:ENSG00000261115
    Gene Name:TMEM178B
    Gene Alias:-
    Gene Type:protein-coding
    CpG%:0.085106
    GC%:0.729167
    TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



    TSS expression

    Expression data not found.
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