TSS: Rfhg 101290.1: Difference between revisions

Revision as of 15:02, 6 December 2023

Basic information about the TSS

TSS ID:	rfhg_101290.1
Species:	human
Chr:	chr7

Start:	142626667
End:	142626691
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D4041198,EH38E2597607)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	AB977838:0 EF101778:0 AB306218:0 M97719:0 LR800361:0 LR800362:0 LR800382:0 LR800383:0 LR800380:0 LR800379:0 LR800378:0 LR800373:0 LR800360:0 LR800371:0 LR800375:0 LR800376:0 LR800372:0 LR800377:0 LR800291:0 LR800374:0 AB306216:0 AB305958:0 AB306164:0 LR800381:0 AB306170:0 AB305849:0 AB306213:0 AB306173:0
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	MTRNR2L6
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-39620
Nearest PromoterID:	NM_001190487
Entrez ID:	100463482
Nearest Unigene:
Nearest Refseq:	NM_001190487
Nearest Ensembl:	ENSG00000270672
Gene Name:	MTRNR2L6
Gene Alias:	HN6
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.520000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=
+|methods=CAGE
 |nearest_ensembl=ENSG00000270672
 |nearest_promoter_id=NM_001190487
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5
 |species=human
 |start=142626667