TSS: Rfhg 10298.1: Difference between revisions

Revision as of 15:31, 6 December 2023

Basic information about the TSS

TSS ID:	rfhg_10298.1
TSS ID(Version3):	hg_4366.1 hg_4365.1
Species:	human
Chr:	chr1

Start:	108746630
End:	108746763
Strand:	+

Source datasets

Protocol

TSS cluster detected^*

14

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D2208224,EH38E1374282)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000483586.5:0 ENST00000370008.4:0 ENST00000469338.1:0 AK290134:0 AK312910:0 AK291322:0 AK223170:0 D63506:0 BC047764:0 BC028028:0 BC038099:0 AF032922:0 CU690494:0
GeneID:	6814
HGNC/MGI_ID:	HGNC:11446
UniProt_ID:	O00186
Nearer transcript ids and distances:

Gene_name:	STXBP3
Gene_symbol:	STXBP3
Gene_synonyms:	UNC-18C
Gene_source:	HGNC:11446

TATA-Box annotation

Distance to TSS:	22
Nearest PromoterID:	NM_007269
Entrez ID:	6814
Nearest Unigene:	Hs.530436
Nearest Refseq:	NM_007269
Nearest Ensembl:	ENSG00000116266
Gene Name:	STXBP3
Gene Alias:	MUNC18-3\|MUNC18C\|PSP\|UNC-18C
Gene Type:	protein-coding
CpG%:	0.067669
GC%:	0.694030
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=HGNC:11446
+|methods=CAGE{{!}}TSS_database{{!}}TSS-seq{{!}}TIF-seq2{{!}}ReCappable-seq{{!}}NETCAGE{{!}}RAMPAGE{{!}}SLIC_CAGE{{!}}oligo_capping{{!}}C1CAGE
 |nearest_ensembl=ENSG00000116266
 |nearest_promoter_id=NM_007269
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5{{!}}EPD{{!}}DBTSS{{!}}ENCODE{{!}}PRJNA615891{{!}}PRJNA401781{{!}}PRJNA548673{{!}}PRJNA4843412{{!}}DRA013844{{!}}PRJDB5282
 |species=human
 |start=108746630
@@ Line 32: / Line 34: @@
 |tata_box=
 |transcript_name=ENST00000483586.5 ENST00000370008.4 ENST00000469338.1 AK290134 AK312910 AK291322 AK223170 D63506 BC047764 BC028028 BC038099 AF032922 CU690494
+|tss_cluster_detected=14
 |tss_id=rfhg_10298.1
 |tss_id_v3=hg_4366.1;hg_4365.1