TSS: Rfhg 107453.1: Difference between revisions

Revision as of 16:54, 6 December 2023

Basic information about the TSS

TSS ID:	rfhg_107453.1
TSS ID(Version3):	hg_93429.1 hg_242897.1
Species:	human
Chr:	chr8

Start:	66925490
End:	66925547
Strand:	-

Source datasets

Protocol

TSS cluster detected^*

14

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D4102564,EH38E2637462)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000520348.5:0 ENST00000521399.5:0 ENST00000521127.1:0 AY264285:0 AK057116:0
GeneID:	641638
HGNC/MGI_ID:	HGNC:32965
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	SNHG6
Gene_symbol:	SNHG6
Gene_synonyms:	HBII-276HG NCRNA00058 U87HG
Gene_source:	HGNC:32965

TATA-Box annotation

Distance to TSS:	23
Nearest PromoterID:	NR_152599
Entrez ID:	641638
Nearest Unigene:	Hs.372680
Nearest Refseq:	NR_002599
Nearest Ensembl:	ENSG00000245910
Gene Name:	SNHG6
Gene Alias:	HBII-276HG\|NCRNA00058\|U87HG
Gene Type:	ncRNA
CpG%:	0.140351
GC%:	0.620690
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=ncRNA
 |hgnc_mgi_id=HGNC:32965
+|methods=CAGE{{!}}TSS-seq{{!}}ReCappable-seq{{!}}TIF-seq2{{!}}SLIC_CAGE{{!}}STRIPE-seq{{!}}RAMPAGE{{!}}oligo_capping{{!}}NETCAGE
 |nearest_ensembl=ENSG00000245910
 |nearest_promoter_id=NR_152599
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5{{!}}DBTSS{{!}}DRA000914{{!}}ENCODE{{!}}PRJNA548673{{!}}PRJNA615891{{!}}PRJNA597322{{!}}PRJNA401781{{!}}PRJNA4843412{{!}}DRA013844
 |species=human
 |start=66925490
@@ Line 32: / Line 34: @@
 |tata_box=
 |transcript_name=ENST00000520348.5 ENST00000521399.5 ENST00000521127.1 AY264285 AK057116
+|tss_cluster_detected=14
 |tss_id=rfhg_107453.1
 |tss_id_v3=hg_93429.1;hg_242897.1