TSS: Rfhg 109058.1: Difference between revisions
From referenceTSS
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|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|methods=NETCAGE{{!}}CAGE | |||
|nearest_ensembl=ENSG00000156482 | |nearest_ensembl=ENSG00000156482 | ||
|nearest_promoter_id=NM_000989 | |nearest_promoter_id=NM_000989 | ||
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|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=PRJNA4843412{{!}}DRA013844 | |||
|species=human | |species=human | ||
|start=98045029 | |start=98045029 | ||
| Line 32: | Line 34: | ||
|tata_box= | |tata_box= | ||
|transcript_name=DQ588525 | |transcript_name=DQ588525 | ||
|tss_cluster_detected= | |tss_cluster_detected=2 | ||
|tss_id=rfhg_109058.1 | |tss_id=rfhg_109058.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id= | |uniprot_id= | ||
}} | }} | ||
Revision as of 17:23, 6 December 2023
Basic information about the TSS
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| Source datasets | PRJNA4843412|DRA013844 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | NETCAGE|CAGE | |||||||||||||
| TSS cluster detected* | 2 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | pELS (EH38D4124177,EH38E2650626) |
|---|---|
| Category: | pELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 507 |
|---|---|
| Nearest PromoterID: | NM_000989 |
| Entrez ID: | 6156 |
| Nearest Unigene: | Hs.400295 |
| Nearest Refseq: | NM_000989 |
| Nearest Ensembl: | ENSG00000156482 |
| Gene Name: | RPL30 |
| Gene Alias: | L30 |
| Gene Type: | protein-coding |
| CpG%: | 0.000000 |
| GC%: | 0.350000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |