TSS: Rfhg 113550.1: Difference between revisions

Revision as of 18:46, 6 December 2023

Basic information about the TSS

TSS ID:	rfhg_113550.1
Species:	human
Chr:	chr9

Start:	14314478
End:	14314488
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	-
Category:	-

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	LF355360:-14 MA590937:-14
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	NFIB
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-342
Nearest PromoterID:	NM_001369475
Entrez ID:	4781
Nearest Unigene:	Hs.644095
Nearest Refseq:	NM_005596
Nearest Ensembl:	ENSG00000147862
Gene Name:	NFIB
Gene Alias:	CTF\|HMGIC/NFIB\|MACID\|NF-I/B\|NF1-B\|NFI-B\|NFI-RED\|NFIB2\|NFIB3
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.363636
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=
+|methods=CAGE
 |nearest_ensembl=ENSG00000147862
 |nearest_promoter_id=NM_001369475
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5
 |species=human
 |start=14314478