TSS: Hg 101885.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.05 |distance_to_tss=65356 |entrez_id=54566 |gc_percent=0.527363 |gene_alias=CG1|EHM2 |gene_description=erythrocyte membrane protein band 4.1 like 4B...") |
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{{TSSDetail | {{TSSDetail | ||
|EHM2= | |||
|chr=chr9 | |||
|cpg_percent=0.05 | |cpg_percent=0.05 | ||
|distance= | |||
|distance_to_tss=65356 | |distance_to_tss=65356 | ||
|end=109255613 | |||
|entrez_id=54566 | |entrez_id=54566 | ||
|gc_percent=0.527363 | |gc_percent=0.527363 | ||
| Line 12: | Line 16: | ||
|nearest_refseq=NM_018424 | |nearest_refseq=NM_018424 | ||
|nearest_unigene=Hs.591901 | |nearest_unigene=Hs.591901 | ||
|num_trans=0 | |||
|species=human | |||
|start=109255602 | |||
|strand=- | |||
|tata_box="-83(TCCTCTTTAAGG,-,0.00),-80(TCTTTAAGGGAC,+,0.00)" | |tata_box="-83(TCCTCTTTAAGG,-,0.00),-80(TCTTTAAGGGAC,+,0.00)" | ||
|transcript_name= | |||
|tss_classification=no | |||
|tss_id=hg_101885.1 | |tss_id=hg_101885.1 | ||
|tss_score=1 | |||
}} | }} | ||
Revision as of 19:02, 8 March 2018
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 65356 |
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| Nearest PromoterID: | NM_018424 |
| Entrez ID: | 54566 |
| Nearest Unigene: | Hs.591901 |
| Nearest Refseq: | NM_018424 |
| Nearest Ensembl: | ENSG00000095203 |
| Gene Name: | EPB41L4B |
| Gene Alias: | CG1 |
| Gene Description: | erythrocyte membrane protein band 4.1 like 4B |
| Gene Type: | protein-coding |
| CpG%: | 0.05 |
| GC%: | 0.527363 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-83(TCCTCTTTAAGG,-,0.00),-80(TCTTTAAGGGAC,+,0.00)" |