TSS: Rfhg 113970.1: Difference between revisions

Latest revision as of 18:54, 6 December 2023

Basic information about the TSS

TSS ID:	rfhg_113970.1
Species:	human
Chr:	chr9

Start:	21240003
End:	21240007
Strand:	-

Source datasets

FANTOM5|EPD

Protocol

CAGE|TSS_database

TSS cluster detected^*

2

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	-
Category:	-

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Transcript_name:	ENST00000380222.4
Distance:	0
GeneID:	3448
HGNC/MGI_ID:	HGNC:5420
UniProt_ID:	P01570

Gene_name:	IFNA14
Gene_symbol:	IFNA14
Gene_synonyms:	IFN-alphaH LEIF2H
Gene_source:	HGNC:5420

TATA-Box annotation

Distance to TSS:	0
Nearest PromoterID:	NM_002172
Entrez ID:	3448
Nearest Unigene:	Hs.93907
Nearest Refseq:	NM_002172
Nearest Ensembl:	ENSG00000228083
Gene Name:	IFNA14
Gene Alias:	IFN-alphaH\|LEIF2H
Gene Description:	interferon alpha 14
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.400000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=HGNC:5420
+|methods=CAGE{{!}}TSS_database
 |nearest_ensembl=ENSG00000228083
 |nearest_promoter_id=NM_002172
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5{{!}}EPD
 |species=human
 |start=21240003