TSS: Rfhg 114269.1: Difference between revisions

Revision as of 18:59, 6 December 2023

Basic information about the TSS

TSS ID:	rfhg_114269.1
Species:	human
Chr:	chr9

Start:	29212975
End:	29212975
Strand:	-

Source datasets

EPD

Protocol

TSS_database

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	dELS,CTCF-bound (EH38D4183874,EH38E2689372)
Category:	dELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	LINGO2
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	626
Nearest PromoterID:	NM_001354574
Entrez ID:	158038
Nearest Unigene:	Hs.444665
Nearest Refseq:	NM_152570
Nearest Ensembl:	ENSG00000174482
Gene Name:	LINGO2
Gene Alias:	LERN3\|LRRN6C
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	1.000000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=
+|methods=TSS_database
 |nearest_ensembl=ENSG00000174482
 |nearest_promoter_id=NM_001354574
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=EPD
 |species=human
 |start=29212975