TSS: Rfhg 114599.1: Difference between revisions
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|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:19909 | |hgnc_mgi_id=HGNC:19909 | ||
|methods=CAGE{{!}}RAMPAGE{{!}}oligo_capping{{!}}ReCappable-seq{{!}}SLIC_CAGE{{!}}TIF-seq2{{!}}NETCAGE{{!}}C1CAGE | |||
|nearest_ensembl=ENSG00000164967 | |nearest_ensembl=ENSG00000164967 | ||
|nearest_promoter_id=NM_148178 | |nearest_promoter_id=NM_148178 | ||
| Line 27: | Line 28: | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=PRJNA401781{{!}}PRJNA548673{{!}}PRJNA615891{{!}}PRJNA4843412{{!}}DRA013844{{!}}PRJDB5282 | |||
|species=human | |species=human | ||
|start=34612081 | |start=34612081 | ||
| Line 32: | Line 34: | ||
|tata_box= | |tata_box= | ||
|transcript_name=ENST00000297613.4 ENST00000378959.9 | |transcript_name=ENST00000297613.4 ENST00000378959.9 | ||
|tss_cluster_detected= | |tss_cluster_detected=10 | ||
|tss_id=rfhg_114599.1 | |tss_id=rfhg_114599.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id=Q8N5L8 | |uniprot_id=Q8N5L8 | ||
}} | }} | ||
Latest revision as of 19:05, 6 December 2023
Basic information about the TSS
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| Source datasets | PRJNA401781|PRJNA548673|PRJNA615891|PRJNA4843412|DRA013844 |PRJDB5282 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE|RAMPAGE|oligo_capping|ReCappable-seq|SLIC_CAGE |TIF-seq2|NETCAGE|C1CAGE | |||||||||||||
| TSS cluster detected* | 10 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D4187181,EH38E2691321) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -7 |
|---|---|
| Nearest PromoterID: | NM_148178 |
| Entrez ID: | 138716 |
| Nearest Unigene: | Hs.15961 |
| Nearest Refseq: | NM_148178 |
| Nearest Ensembl: | ENSG00000164967 |
| Gene Name: | RPP25L |
| Gene Alias: | C9orf23|bA296L22.5 |
| Gene Description: | ribonuclease P/MRP subunit p25 like |
| Gene Type: | protein-coding |
| CpG%: | 0.170213 |
| GC%: | 0.750000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.