TSS: Rfhg 114601.1: Difference between revisions
From referenceTSS
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|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:2713 | |hgnc_mgi_id=HGNC:2713 | ||
|methods=CAGE{{!}}TSS_database{{!}}RAMPAGE{{!}}STRIPE-seq{{!}}C1CAGE{{!}}SLIC_CAGE{{!}}TIF-seq2{{!}}NETCAGE{{!}}ReCappable-seq{{!}}oligo_capping | |||
|nearest_ensembl=ENSG00000137100 | |nearest_ensembl=ENSG00000137100 | ||
|nearest_promoter_id=NM_001281427 | |nearest_promoter_id=NM_001281427 | ||
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|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5{{!}}EPD{{!}}PRJNA401781{{!}}PRJNA597322{{!}}PRJDB5282{{!}}PRJNA615891{{!}}PRJNA4843412{{!}}DRA013844{{!}}PRJNA548673 | |||
|species=human | |species=human | ||
|start=34620466 | |start=34620466 |
Latest revision as of 19:05, 6 December 2023
Basic information about the TSS
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Source datasets | FANTOM5|EPD|PRJNA401781|PRJNA597322|PRJDB5282|PRJNA615891 |PRJNA4843412|DRA013844|PRJNA548673 | |||||||||||||||
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Protocol | CAGE|TSS_database|RAMPAGE|STRIPE-seq|C1CAGE|SLIC_CAGE |TIF-seq2|NETCAGE|ReCappable-seq|oligo_capping | |||||||||||||||
TSS cluster detected* | 13 |
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
Description: | PLS,CTCF-bound (EH38D4187187,EH38E2691327) |
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Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
Distance to TSS: | 0 |
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Nearest PromoterID: | NM_001281427 |
Entrez ID: | 11258 |
Nearest Unigene: | Hs.511768 |
Nearest Refseq: | NM_007234 |
Nearest Ensembl: | ENSG00000137100 |
Gene Name: | DCTN3 |
Gene Alias: | DCTN-22|DCTN22 |
Gene Description: | dynactin subunit 3 |
Gene Type: | protein-coding |
CpG%: | 0.067797 |
GC%: | 0.600000 |
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.