TSS: Rfhg 115265.1: Difference between revisions
From referenceTSS
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|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:28537 | |hgnc_mgi_id=HGNC:28537 | ||
|methods=CAGE{{!}}TSS_database | |||
|nearest_ensembl=ENSG00000181778 | |nearest_ensembl=ENSG00000181778 | ||
|nearest_promoter_id=NM_153237 | |nearest_promoter_id=NM_153237 | ||
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|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5{{!}}EPD | |||
|species=human | |species=human | ||
|start=68540880 | |start=68540880 |
Latest revision as of 19:17, 6 December 2023
Basic information about the TSS
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Source datasets | FANTOM5|EPD | |||||||||||||
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Protocol | CAGE|TSS_database | |||||||||||||
TSS cluster detected* | 2 |
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
Description: | PLS (EH38D4192021,EH38E2694561) |
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Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
Distance to TSS: | -15 |
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Nearest PromoterID: | NM_153237 |
Entrez ID: | 169693 |
Nearest Unigene: | Hs.663056 |
Nearest Refseq: | NM_153237 |
Nearest Ensembl: | ENSG00000181778 |
Gene Name: | TMEM252 |
Gene Alias: | C9orf71 |
Gene Description: | transmembrane protein 252 |
Gene Type: | protein-coding |
CpG%: | 0.000000 |
GC%: | 0.400000 |
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.