TSS: Rfhg 11531.1: Difference between revisions

Revision as of 19:18, 6 December 2023

Basic information about the TSS

TSS ID:	rfhg_11531.1
Species:	human
Chr:	chr1

Start:	119811457
End:	119811468
Strand:	-

Source datasets

FANTOM5|EPD

Protocol

CAGE|TSS_database

TSS cluster detected^*

2

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS (EH38D2218216,EH38E1381658)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000256585.10:0
GeneID:	83998
HGNC/MGI_ID:	HGNC:22977
UniProt_ID:	Q9BYZ8
Nearer transcript ids and distances:

Gene_name:	REG4
Gene_symbol:	REG4
Gene_synonyms:	GISP REG-IV RELP
Gene_source:	HGNC:22977

TATA-Box annotation

Distance to TSS:	-2
Nearest PromoterID:	NM_001159353
Entrez ID:	83998
Nearest Unigene:	Hs.660883
Nearest Refseq:	NM_032044
Nearest Ensembl:	ENSG00000134193
Gene Name:	REG4
Gene Alias:	GISP\|REG-IV\|RELP
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.666667
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=HGNC:22977
+|methods=CAGE{{!}}TSS_database
 |nearest_ensembl=ENSG00000134193
 |nearest_promoter_id=NM_001159353
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5{{!}}EPD
 |species=human
 |start=119811457