TSS: Rfhg 116612.1: Difference between revisions

Latest revision as of 19:40, 6 December 2023

Basic information about the TSS

TSS ID:	rfhg_116612.1
TSS ID(Version3):	hg_101373.1
Species:	human
Chr:	chr9

Start:	91361890
End:	91361951
Strand:	-

Source datasets

Protocol

TSS cluster detected^*

10

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D4210599,EH38E2706849)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Transcript_name:	ENST00000303617.5 ENST00000375731.9 X79888 BC020722 DQ892036 DQ895227 AB528075 AM393420 CU676666 AK302453
Distance:	0
GeneID:	549
HGNC/MGI_ID:	HGNC:890
UniProt_ID:	B4DYI6 Q13825

Gene_name:	AUH
Gene_symbol:	AUH
Gene_synonyms:
Gene_source:	HGNC:890

TATA-Box annotation

Distance to TSS:	4
Nearest PromoterID:	NM_001698
Entrez ID:	549
Nearest Unigene:	Hs.175905
Nearest Refseq:	NM_001698
Nearest Ensembl:	ENSG00000148090
Gene Name:	AUH
Gene Alias:	-
Gene Description:	AU RNA binding methylglutaconyl-CoA hydratase
Gene Type:	protein-coding
CpG%:	0.163934
GC%:	0.758065
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=HGNC:890
+|methods=CAGE{{!}}TSS_database{{!}}TIF-seq2{{!}}SLIC_CAGE{{!}}ReCappable-seq{{!}}STRIPE-seq{{!}}NETCAGE
 |nearest_ensembl=ENSG00000148090
 |nearest_promoter_id=NM_001698
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5{{!}}EPD{{!}}DRA000914{{!}}PRJNA615891{{!}}PRJNA401781{{!}}PRJNA548673{{!}}PRJNA597322{{!}}PRJNA4843412{{!}}DRA013844
 |species=human
 |start=91361890