TSS: Rfhg 117442.1: Difference between revisions
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|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:18311 | |hgnc_mgi_id=HGNC:18311 | ||
|methods=CAGE{{!}}TSS_database{{!}}C1CAGE{{!}}NETCAGE{{!}}STRIPE-seq{{!}}TIF-seq2{{!}}RAMPAGE{{!}}SLIC_CAGE{{!}}oligo_capping{{!}}ReCappable-seq | |||
|nearest_ensembl=ENSG00000023318 | |nearest_ensembl=ENSG00000023318 | ||
|nearest_promoter_id=NM_015051 | |nearest_promoter_id=NM_015051 | ||
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|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5{{!}}EPD{{!}}DRA000914{{!}}ENCODE{{!}}PRJDB5282{{!}}PRJNA4843412{{!}}DRA013844{{!}}PRJNA597322{{!}}PRJNA401781{{!}}PRJNA615891{{!}}PRJNA548673 | |||
|species=human | |species=human | ||
|start=100098972 | |start=100098972 | ||
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|tata_box= | |tata_box= | ||
|transcript_name=ENST00000262455.7 AB011145 BX648519 AK075024 AY359048 BC005374 GQ900902 | |transcript_name=ENST00000262455.7 AB011145 BX648519 AK075024 AY359048 BC005374 GQ900902 | ||
|tss_cluster_detected=15 | |||
|tss_id=rfhg_117442.1 | |tss_id=rfhg_117442.1 | ||
|tss_id_v3=hg_101728.1 | |tss_id_v3=hg_101728.1 | ||
Latest revision as of 19:56, 6 December 2023
Basic information about the TSS
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| Source datasets | FANTOM5|EPD|DRA000914|ENCODE|PRJDB5282|PRJNA4843412 |DRA013844|PRJNA597322|PRJNA401781|PRJNA615891|PRJNA548673 | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE|TSS_database|C1CAGE|NETCAGE|STRIPE-seq|TIF-seq2 |RAMPAGE|SLIC_CAGE|oligo_capping|ReCappable-seq | |||||||||||||||
| TSS cluster detected* | 15 | |||||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D4218692,EH38E2712723) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -6 |
|---|---|
| Nearest PromoterID: | NM_015051 |
| Entrez ID: | 23071 |
| Nearest Unigene: | Hs.154023 |
| Nearest Refseq: | NM_015051 |
| Nearest Ensembl: | ENSG00000023318 |
| Gene Name: | ERP44 |
| Gene Alias: | PDIA10|TXNDC4 |
| Gene Description: | endoplasmic reticulum protein 44 |
| Gene Type: | protein-coding |
| CpG%: | 0.072464 |
| GC%: | 0.657143 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.