TSS: Rfhg 119645.1: Difference between revisions

Latest revision as of 20:37, 6 December 2023

Basic information about the TSS

TSS ID:	rfhg_119645.1
Species:	human
Chr:	chr9

Start:	127950606
End:	127950621
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	-
Category:	-

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Transcript_name:	BC137087 BC137088
Distance:	18
GeneID:	399665
HGNC/MGI_ID:	HGNC:31419
UniProt_ID:

Gene_name:	FAM102A
Gene_symbol:	EEIG1
Gene_synonyms:	Eeig1 SYM-3A bA203J24.7
Gene_source:	HGNC:31419

TATA-Box annotation

Distance to TSS:	101
Nearest PromoterID:	NM_203305
Entrez ID:	399665
Nearest Unigene:	Hs.535972
Nearest Refseq:	NM_203305
Nearest Ensembl:	ENSG00000167106
Gene Name:	FAM102A
Gene Alias:	C9orf132\|EEIG1\|SYM-3A\|bA203J24.7
Gene Description:	family with sequence similarity 102 member A
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.437500
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=HGNC:31419
+|methods=CAGE
 |nearest_ensembl=ENSG00000167106
 |nearest_promoter_id=NM_203305
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5
 |species=human
 |start=127950606