TSS: Rfhg 119883.1: Difference between revisions

Revision as of 20:42, 6 December 2023

Basic information about the TSS

TSS ID:	rfhg_119883.1
Species:	human
Chr:	chr9

Start:	128685064
End:	128685081
Strand:	+

Source datasets

FANTOM5|EPD

Protocol

CAGE|TSS_database

TSS cluster detected^*

2

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D4243027,EH38E2729769)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	NM_001248000.2:0
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	SET
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	0
Nearest PromoterID:	NM_001248000
Entrez ID:	6418
Nearest Unigene:	Hs.436687
Nearest Refseq:	NM_003011
Nearest Ensembl:	ENSG00000119335
Gene Name:	SET
Gene Alias:	2PP2A\|I2PP2A\|IGAAD\|IPP2A2\|MRD58\|PHAPII\|TAF-I\|TAF-IBETA
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.555556
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=
+|methods=CAGE{{!}}TSS_database
 |nearest_ensembl=ENSG00000119335
 |nearest_promoter_id=NM_001248000
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5{{!}}EPD
 |species=human
 |start=128685064