TSS: Rfhg 121817.1: Difference between revisions

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|gene_type=protein-coding
|gene_type=protein-coding
|hgnc_mgi_id=
|hgnc_mgi_id=
|methods=CAGE
|nearest_ensembl=ENSG00000107929
|nearest_ensembl=ENSG00000107929
|nearest_promoter_id=NM_001351277
|nearest_promoter_id=NM_001351277
Line 27: Line 28:
|peak_score=1
|peak_score=1
|reftss_version=4
|reftss_version=4
|source_datasets=FANTOM5
|species=human
|species=human
|start=873193
|start=873193

Revision as of 21:16, 6 December 2023

Basic information about the TSS


TSS ID:rfhg_121817.1
Species:human
Chr:chr10
Start:873193
End:873215
Strand:-
Source datasetsFANTOM5
ProtocolCAGE
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation


Description:dELS (EH38D2304830,EH38E1441526)
Category:dELS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation


Nearest transcript id and distance:LF330809:102
MA566386:102
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:
    Gene_name:LARP4B
    Gene_symbol:
    Gene_synonyms:
    Gene_source:



    TATA-Box annotation


    Distance to TSS:58501
    Nearest PromoterID:NM_001351277
    Entrez ID:23185
    Nearest Unigene:Hs.159069
    Nearest Refseq:NM_015155
    Nearest Ensembl:ENSG00000107929
    Gene Name:LARP4B
    Gene Alias:KIAA0217|LARP5
    Gene Type:protein-coding
    CpG%:0.045455
    GC%:0.478261
    TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):