TSS: Rfhg 124579.1: Difference between revisions

Revision as of 22:06, 6 December 2023

Basic information about the TSS

TSS ID:	rfhg_124579.1
TSS ID(Version3):	hg_104636.1
Species:	human
Chr:	chr10

Start:	32929846
End:	32929906
Strand:	+

Source datasets

FANTOM5|DRA013844

Protocol

CAGE

TSS cluster detected^*

2

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	dELS (EH38D2332116,EH38E1460489)
Category:	dELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	ITGB1
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	5682
Nearest PromoterID:	NM_033668
Entrez ID:	3688
Nearest Unigene:	Hs.643813
Nearest Refseq:	NM_002211
Nearest Ensembl:	ENSG00000150093
Gene Name:	ITGB1
Gene Alias:	CD29\|FNRB\|GPIIA\|MDF2\|MSK12\|VLA-BETA\|VLAB
Gene Type:	protein-coding
CpG%:	0.016667
GC%:	0.491803
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=
+|methods=CAGE
 |nearest_ensembl=ENSG00000150093
 |nearest_promoter_id=NM_033668
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5{{!}}DRA013844
 |species=human
 |start=32929846
@@ Line 32: / Line 34: @@
 |tata_box=
 |transcript_name=
+|tss_cluster_detected=2
 |tss_id=rfhg_124579.1
 |tss_id_v3=hg_104636.1