TSS: Rfhg 126054.1: Difference between revisions

Revision as of 22:33, 6 December 2023

Basic information about the TSS

TSS ID:	rfhg_126054.1
Species:	human
Chr:	chr10

Start:	63641887
End:	63641894
Strand:	+

Source datasets

PRJNA597322

Protocol

STRIPE-seq

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	dELS (EH38D2352217,EH38E1473100)
Category:	dELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	JMJD1C
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-120000
Nearest PromoterID:	NM_001318154
Entrez ID:	221037
Nearest Unigene:	Hs.413416
Nearest Refseq:	NM_004241
Nearest Ensembl:	ENSG00000171988
Gene Name:	JMJD1C
Gene Alias:	KDM3C\|TRIP-8\|TRIP8
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.625000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=
+|methods=STRIPE-seq
 |nearest_ensembl=ENSG00000171988
 |nearest_promoter_id=NM_001318154
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=PRJNA597322
 |species=human
 |start=63641887