TSS: Rfhg 126930.1: Difference between revisions

Revision as of 22:48, 6 December 2023

Basic information about the TSS

TSS ID:	rfhg_126930.1
TSS ID(Version3):	hg_110106.1
Species:	human
Chr:	chr10

Start:	73730467
End:	73730518
Strand:	-

Source datasets

Protocol

TSS cluster detected^*

13

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D2360097,EH38E1478429)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000584747.5:0 BC063124:0 BC099910:0 BC046139:0 AK294783:0
GeneID:	729096
HGNC/MGI_ID:	HGNC:23652
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	BMS1P4-AGAP5
Gene_symbol:	BMS1P4
Gene_synonyms:	OTTHUMG00000018478
Gene_source:	HGNC:23652

TATA-Box annotation

Distance to TSS:	14
Nearest PromoterID:	NR_160426
Entrez ID:	113939925
Nearest Unigene:
Nearest Refseq:	NR_160425
Nearest Ensembl:
Gene Name:	BMS1P4-AGAP5
Gene Alias:	-
Gene Type:	pseudo
CpG%:	0.078431
GC%:	0.538462
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=pseudo
 |hgnc_mgi_id=HGNC:23652
+|methods=CAGE{{!}}RAMPAGE{{!}}TIF-seq2{{!}}NETCAGE{{!}}STRIPE-seq{{!}}SLIC_CAGE{{!}}oligo_capping{{!}}ReCappable-seq{{!}}C1CAGE
 |nearest_ensembl=
 |nearest_promoter_id=NR_160426
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5{{!}}ENCODE{{!}}PRJNA401781{{!}}PRJNA615891{{!}}PRJNA4843412{{!}}DRA013844{{!}}PRJNA597322{{!}}PRJNA548673{{!}}PRJDB5282
 |species=human
 |start=73730467
@@ Line 32: / Line 34: @@
 |tata_box=
 |transcript_name=ENST00000584747.5 BC063124 BC099910 BC046139 AK294783
+|tss_cluster_detected=13
 |tss_id=rfhg_126930.1
 |tss_id_v3=hg_110106.1