TSS: Rfhg 127008.1: Difference between revisions

Revision as of 22:50, 6 December 2023

Basic information about the TSS

TSS ID:	rfhg_127008.1
TSS ID(Version3):	hg_105573.1 hg_105574.1
Species:	human
Chr:	chr10

Start:	73998084
End:	73998348
Strand:	+

Source datasets

Protocol

TSS cluster detected^*

16

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	-
Category:	-

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000624354.3:0 ENST00000372755.7:0 ENST00000478896.2:0 ENST00000211998.10:0 AK304823:0 EU794673:0 AK300280:0 AK296509:0 BC039174:0 GQ900900:0 M33308:0 AB385172:0 DQ894680:0
GeneID:	7414
HGNC/MGI_ID:	HGNC:12665
UniProt_ID:	A0A024QZN4 A0A096LPE1 A0A384NYN5 B4DKC9 B4DTM7 B4E3Q9 V9HWK2
Nearer transcript ids and distances:

Gene_name:	VCL
Gene_symbol:	VCL
Gene_synonyms:
Gene_source:	HGNC:12665

TATA-Box annotation

Distance to TSS:	100
Nearest PromoterID:	NM_003373
Entrez ID:	7414
Nearest Unigene:	Hs.643896
Nearest Refseq:	NM_003373
Nearest Ensembl:	ENSG00000035403
Gene Name:	VCL
Gene Alias:	CMD1W\|CMH15\|HEL114\|MV\|MVCL
Gene Type:	protein-coding
CpG%:	0.121212
GC%:	0.667925
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=HGNC:12665
+|methods=CAGE{{!}}TSS_database{{!}}RAMPAGE{{!}}SLIC_CAGE{{!}}ReCappable-seq{{!}}TIF-seq2{{!}}NETCAGE{{!}}C1CAGE{{!}}STRIPE-seq{{!}}oligo_capping
 |nearest_ensembl=ENSG00000035403
 |nearest_promoter_id=NM_003373
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5{{!}}EPD{{!}}DRA000914{{!}}ENCODE{{!}}RAMPAGE{{!}}PRJNA401781{{!}}PRJNA615891{{!}}PRJNA548673{{!}}PRJNA4843412{{!}}DRA013844{{!}}PRJDB5282{{!}}PRJNA597322
 |species=human
 |start=73998084
@@ Line 32: / Line 34: @@
 |tata_box=
 |transcript_name=ENST00000624354.3 ENST00000372755.7 ENST00000478896.2 ENST00000211998.10 AK304823 EU794673 AK300280 AK296509 BC039174 GQ900900 M33308 AB385172 DQ894680
+|tss_cluster_detected=16
 |tss_id=rfhg_127008.1
 |tss_id_v3=hg_105573.1;hg_105574.1