TSS: Rfhg 129074.1: Difference between revisions

Revision as of 23:26, 6 December 2023

Basic information about the TSS

TSS ID:	rfhg_129074.1
Species:	human
Chr:	chr10

Start:	99533165
End:	99533174
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS (EH38D2381483,EH38E1492922)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	KJ903917:-33
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	NKX2-3
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	227
Nearest PromoterID:	NM_145285
Entrez ID:	159296
Nearest Unigene:	Hs.243272
Nearest Refseq:	NM_145285
Nearest Ensembl:	ENSG00000119919
Gene Name:	NKX2-3
Gene Alias:	CSX3\|NK2.3\|NKX2.3\|NKX2C\|NKX4-3
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.400000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=
+|methods=CAGE
 |nearest_ensembl=ENSG00000119919
 |nearest_promoter_id=NM_145285
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5
 |species=human
 |start=99533165