TSS: Rfhg 141864.1: Difference between revisions

Revision as of 03:31, 7 December 2023

Basic information about the TSS

TSS ID:	rfhg_141864.1
Species:	human
Chr:	chr11

Start:	86109434
End:	86109438
Strand:	+

Source datasets

PRJNA401781

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	dELS (EH38D2478720,EH38E1558444)
Category:	dELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	BC016696:64
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	PICALM
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-39576
Nearest PromoterID:	NM_001206947
Entrez ID:	8301
Nearest Unigene:	Hs.163893
Nearest Refseq:	NM_007166
Nearest Ensembl:	ENSG00000073921
Gene Name:	PICALM
Gene Alias:	CALM\|CLTH\|LAP
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.400000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=
+|methods=CAGE
 |nearest_ensembl=ENSG00000073921
 |nearest_promoter_id=NM_001206947
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=PRJNA401781
 |species=human
 |start=86109434