TSS: Rfhg 142139.1: Difference between revisions

Revision as of 03:36, 7 December 2023

Basic information about the TSS

TSS ID:	rfhg_142139.1
Species:	human
Chr:	chr11

Start:	93732500
End:	93732500
Strand:	-

Source datasets

PRJNA401781

Protocol

oligo_capping

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS (EH38D2483995,EH38E1561550)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000384574.1:1 AJ609454:1
GeneID:	654320
HGNC/MGI_ID:	HGNC:32596
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	SNORA8
Gene_symbol:	SNORA8
Gene_synonyms:	ACA8
Gene_source:	HGNC:32596

TATA-Box annotation

Distance to TSS:	-1
Nearest PromoterID:	NR_002920
Entrez ID:	654320
Nearest Unigene:	Hs.741060
Nearest Refseq:	NR_002920
Nearest Ensembl:	ENSG00000207304
Gene Name:	SNORA8
Gene Alias:	ACA8
Gene Type:	snoRNA
CpG%:	0.000000
GC%:	0.000000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=snoRNA
 |hgnc_mgi_id=HGNC:32596
+|methods=oligo_capping
 |nearest_ensembl=ENSG00000207304
 |nearest_promoter_id=NR_002920
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=PRJNA401781
 |species=human
 |start=93732500