TSS: Rfhg 143868.1: Difference between revisions

Revision as of 04:10, 7 December 2023

Basic information about the TSS

TSS ID:	rfhg_143868.1
Species:	human
Chr:	chr11

Start:	118436465
End:	118436508
Strand:	+

Source datasets

PRJNA4843412|DRA013844

Protocol

NETCAGE|CAGE

TSS cluster detected^*

2

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	-
Category:	-

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000389506.10:0 ENST00000534358.8:0 D14540:0
GeneID:	4297
HGNC/MGI_ID:	HGNC:7132
UniProt_ID:	Q03164
Nearer transcript ids and distances:

Gene_name:	KMT2A
Gene_symbol:	KMT2A
Gene_synonyms:	ALL-1 ALL1 CXXC7 HRX HTRX HTRX1 MLL1 MLL1A TRX1
Gene_source:	HGNC:7132

TATA-Box annotation

Distance to TSS:	-4
Nearest PromoterID:	NM_001197104
Entrez ID:	4297
Nearest Unigene:	Hs.258855
Nearest Refseq:	NM_005933
Nearest Ensembl:	ENSG00000118058
Gene Name:	KMT2A
Gene Alias:	ALL-1\|CXXC7\|HRX\|HTRX1\|MLL\|MLL1\|MLL1A\|TRX1\|WDSTS
Gene Type:	protein-coding
CpG%:	0.069767
GC%:	0.636364
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=HGNC:7132
+|methods=NETCAGE{{!}}CAGE
 |nearest_ensembl=ENSG00000118058
 |nearest_promoter_id=NM_001197104
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=PRJNA4843412{{!}}DRA013844
 |species=human
 |start=118436465
@@ Line 32: / Line 34: @@
 |tata_box=
 |transcript_name=ENST00000389506.10 ENST00000534358.8 D14540
-|tss_cluster_detected=5
+|tss_cluster_detected=2
 |tss_id=rfhg_143868.1
 |tss_score=1
 |uniprot_id=Q03164
 }}