TSS: Hg 101915.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0 |distance_to_tss=-37331 |entrez_id=11217 |gc_percent=0.40796 |gene_alias=AKAP-2|AKAPKL|MISP2|PRKA2 |gene_description=A-kinase anchoring protein 2 |g...") |
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{{TSSDetail | {{TSSDetail | ||
|AKAPKL= | |||
|MISP2= | |||
|PRKA2= | |||
|chr=chr9 | |||
|cpg_percent=0 | |cpg_percent=0 | ||
|distance= | |||
|distance_to_tss=-37331 | |distance_to_tss=-37331 | ||
|end=110088175 | |||
|entrez_id=11217 | |entrez_id=11217 | ||
|gc_percent=0.40796 | |gc_percent=0.40796 | ||
| Line 12: | Line 18: | ||
|nearest_refseq=NM_001004065 | |nearest_refseq=NM_001004065 | ||
|nearest_unigene=Hs.591908 | |nearest_unigene=Hs.591908 | ||
|num_trans=0 | |||
|species=human | |||
|start=110088164 | |||
|strand=- | |||
|tata_box="-43(ATCTCTAAAGGG,-,0.00),-34(GGGTATTTAAAC,-,0.00)" | |tata_box="-43(ATCTCTAAAGGG,-,0.00),-34(GGGTATTTAAAC,-,0.00)" | ||
|transcript_name= | |||
|tss_classification=no | |||
|tss_id=hg_101915.1 | |tss_id=hg_101915.1 | ||
|tss_score=1 | |||
}} | }} | ||
Revision as of 19:04, 8 March 2018
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -37331 |
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| Nearest PromoterID: | NM_001136562 |
| Entrez ID: | 11217 |
| Nearest Unigene: | Hs.591908 |
| Nearest Refseq: | NM_001004065 |
| Nearest Ensembl: | ENSG00000241978 |
| Gene Name: | AKAP2 |
| Gene Alias: | AKAP-2 |
| Gene Description: | A-kinase anchoring protein 2 |
| Gene Type: | protein-coding |
| CpG%: | 0 |
| GC%: | 0.40796 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-43(ATCTCTAAAGGG,-,0.00),-34(GGGTATTTAAAC,-,0.00)" |