TSS: Rfhg 14592.1: Difference between revisions

Revision as of 04:49, 7 December 2023

Basic information about the TSS

TSS ID:	rfhg_14592.1
Species:	human
Chr:	chr1

Start:	159862649
End:	159862659
Strand:	-

Source datasets

FANTOM5|EPD

Protocol

CAGE|TSS_database

TSS cluster detected^*

2

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	-
Category:	-

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000368100.1:0
GeneID:	391123
HGNC/MGI_ID:	HGNC:32063
UniProt_ID:	P0DPA2
Nearer transcript ids and distances:

Gene_name:	VSIG8
Gene_symbol:	VSIG8
Gene_synonyms:
Gene_source:	HGNC:32063

TATA-Box annotation

Distance to TSS:	3
Nearest PromoterID:	NM_001013661
Entrez ID:	391123
Nearest Unigene:	Hs.647718
Nearest Refseq:	NM_001013661
Nearest Ensembl:	ENSG00000243284
Gene Name:	VSIG8
Gene Alias:	-
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.545455
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=HGNC:32063
+|methods=CAGE{{!}}TSS_database
 |nearest_ensembl=ENSG00000243284
 |nearest_promoter_id=NM_001013661
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5{{!}}EPD
 |species=human
 |start=159862649