TSS: Rfhg 146466.1: Difference between revisions

Revision as of 04:59, 7 December 2023

Basic information about the TSS

TSS ID:	rfhg_146466.1
Species:	human
Chr:	chr12

Start:	6825653
End:	6825680
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	dELS,CTCF-bound (EH38D2526316,EH38E1590314)
Category:	dELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	LF365848:410 MA601425:410
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	P3H3
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-2741
Nearest PromoterID:	NM_014262
Entrez ID:	10536
Nearest Unigene:	Hs.631655
Nearest Refseq:	NM_014262
Nearest Ensembl:	ENSG00000110811
Gene Name:	P3H3
Gene Alias:	GRCB\|HSU47926\|LEPREL2
Gene Type:	protein-coding
CpG%:	0.037037
GC%:	0.571429
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=
+|methods=CAGE
 |nearest_ensembl=ENSG00000110811
 |nearest_promoter_id=NM_014262
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5
 |species=human
 |start=6825653