TSS: Rfhg 147974.1: Difference between revisions

Revision as of 05:28, 7 December 2023

Basic information about the TSS

TSS ID:	rfhg_147974.1
Species:	human
Chr:	chr12

Start:	14365694
End:	14365712
Strand:	-

Source datasets

ENCODE

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D2532527,EH38E1594811)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000509114.2:191
GeneID:
HGNC/MGI_ID:	HGNC:36260
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	ATF7IP
Gene_symbol:	RPL30P11
Gene_synonyms:
Gene_source:	HGNC:36260

TATA-Box annotation

Distance to TSS:	21
Nearest PromoterID:	NM_001286514
Entrez ID:	55729
Nearest Unigene:	Hs.504856
Nearest Refseq:	NM_018179
Nearest Ensembl:	ENSG00000171681
Gene Name:	ATF7IP
Gene Alias:	AM\|ATF-IP\|MCAF\|MCAF1\|p621
Gene Type:	protein-coding
CpG%:	0.222222
GC%:	0.894737
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=HGNC:36260
+|methods=CAGE
 |nearest_ensembl=ENSG00000171681
 |nearest_promoter_id=NM_001286514
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=ENCODE
 |species=human
 |start=14365694