TSS: Rfhg 154793.1: Difference between revisions

Revision as of 07:37, 7 December 2023

Basic information about the TSS

TSS ID:	rfhg_154793.1
Species:	human
Chr:	chr12

Start:	93467527
End:	93467543
Strand:	-

Source datasets

ENCODE

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D2591818,EH38E1633489)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	MRPL42
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	21
Nearest PromoterID:	NM_014050
Entrez ID:	28977
Nearest Unigene:	Hs.199579
Nearest Refseq:	NM_014050
Nearest Ensembl:	ENSG00000198015
Gene Name:	MRPL42
Gene Alias:	HSPC204\|L31MT\|L42MT\|MRP-L31\|MRP-L42\|MRP-S32\|MRPL31\|MRPS32\|PTD007\|RPML31\|S32MT
Gene Type:	protein-coding
CpG%:	0.125000
GC%:	0.705882
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=
+|methods=CAGE
 |nearest_ensembl=ENSG00000198015
 |nearest_promoter_id=NM_014050
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=ENCODE
 |species=human
 |start=93467527