TSS: Rfhg 157544.1: Difference between revisions

Revision as of 08:28, 7 December 2023

Basic information about the TSS

TSS ID:	rfhg_157544.1
TSS ID(Version3):	hg_128507.1 hg_128509.1 hg_128508.1
Species:	human
Chr:	chr12

Start:	122064277
End:	122064381
Strand:	+

Source datasets

FANTOM5|PRJNA548673|PRJNA401781|PRJNA615891

Protocol

TSS cluster detected^*

8

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D2617049,EH38E1651318)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	KX645782:0 KX645783:0 KX645781:0
GeneID:	100506691
HGNC/MGI_ID:	HGNC:56073
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	LOC100506691
Gene_symbol:	LINC02985
Gene_synonyms:	AC156455.1
Gene_source:	HGNC:56073

TATA-Box annotation

Distance to TSS:	1039
Nearest PromoterID:	NR_135044
Entrez ID:	100506691
Nearest Unigene:	Hs.536336
Nearest Refseq:	NR_135044
Nearest Ensembl:	ENSG00000256546
Gene Name:	LOC100506691
Gene Alias:	-
Gene Type:	ncRNA
CpG%:	0.009615
GC%:	0.542857
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=ncRNA
 |hgnc_mgi_id=HGNC:56073
+|methods=CAGE{{!}}RAMPAGE{{!}}oligo_capping{{!}}ReCappable-seq{{!}}SLIC_CAGE{{!}}TIF-seq2
 |nearest_ensembl=ENSG00000256546
 |nearest_promoter_id=NR_135044
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5{{!}}PRJNA548673{{!}}PRJNA401781{{!}}PRJNA615891
 |species=human
 |start=122064277
@@ Line 32: / Line 34: @@
 |tata_box=
 |transcript_name=KX645782 KX645783 KX645781
+|tss_cluster_detected=8
 |tss_id=rfhg_157544.1
 |tss_id_v3=hg_128507.1;hg_128509.1;hg_128508.1