TSS: Rfhg 158609.1: Difference between revisions

Revision as of 08:47, 7 December 2023

Basic information about the TSS

TSS ID:	rfhg_158609.1
Species:	human
Chr:	chr13

Start:	20161040
End:	20161092
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D2627859,EH38E1658463)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000241125.4:0
GeneID:	2700
HGNC/MGI_ID:	HGNC:4277
UniProt_ID:	Q9Y6H8
Nearer transcript ids and distances:

Gene_name:	GJA3
Gene_symbol:	GJA3
Gene_synonyms:	CX46
Gene_source:	HGNC:4277

TATA-Box annotation

Distance to TSS:	-14
Nearest PromoterID:	NM_021954
Entrez ID:	2700
Nearest Unigene:	Hs.130313
Nearest Refseq:	NM_021954
Nearest Ensembl:	ENSG00000121743
Gene Name:	GJA3
Gene Alias:	CTRCT14\|CX46\|CZP3
Gene Type:	protein-coding
CpG%:	0.115385
GC%:	0.754717
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=HGNC:4277
+|methods=CAGE
 |nearest_ensembl=ENSG00000121743
 |nearest_promoter_id=NM_021954
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5
 |species=human
 |start=20161040